Since you don't have a Identity column here you might have to use a row number to join the other columns back in.
Generally you could just split the information accordingly in your lookup tables and do it like this:
SELECT DISTINCT col1, col2, col3
INTO lookuptable1
FROM lookuptable
To prevent inserting duplicate rows you can also specify UNIQUE Constraints like this:
CREATE TABLE lookuptable1
( ID int IDENTITY(1,1) PRIMARY KEY
, col1 nvarchar(50)
, col2 nvarchar(50)
, col3 nvarchar(50)
CONSTRAINT [uqLookuptable1cols1_3] UNIQUE (col1, col2, col3)
)
Or if the table already exists:
ALTER TABLE lookuptable1 ADD CONSTRAINT [uqLookuptable1cols1_3] UNIQUE (col1, col2, col3)