This will return the first column from each query, regardless of name:
$FolderPath = 'C:\users\lyonsg\Documents\Scripts\Powershell\HelloWorldTest\'
#Loop through the .sql files and run them
foreach ($filename in get-childitem -path $FolderPath -filter "*.sql" | sort-object) {
(invoke-sqlcmd –ServerInstance $SQLServer -InputFile $filename.fullname).Item(0)
}
If you need more than one column might be more complicated.