You should probably have started that in a new thread, your question will get lost if you tag it on to the end of an old thread like this.

Anyway, assuming you are using the 'rocket u2' universe product

With this tool:

U2 Metadata Manager (U2 MDM)

You can manage the metadata in your universe files.

I am guessing that SQL Server is reading the metadata of your universe data structures, which doesn't match the contents of the universe data structures. Get the metadata up to date and it should be fine.