Modify the config file on both nodes so that they point to the same instances/packages/file store...
I did this for my previous employer in a 2 node cluster and it worked fine...
http://dougbert.com/blog/post/ssis-and-clustering-what-you-should-do-instead.aspx
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Mike Hahn - MCSomething someday:-)
Right way to ask for help!!
http://www.sqlservercentral.com/articles/Best+Practices/61537/
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