Maybe:
Select IsNull(t1.ServerName,t2.ServerName) as ServerName,
IsNull(t1.ApplicationName,t2.ApplicationName) as ApplicationName,
Case
When t1.ApplicationName is null then 'Table2'
When t2.ApplicationName is null then 'Table1'
Else 'Combine'
End AppServer
From Table1 t1
Full Outer Join Table2 t2 on
(t1.ServerName = t2.ServerName) and (t1.ApplicationName = t2.ApplicationName)