• I've changed the ORDER BY on one of the statements and it seems to have fixed it:

    IF NOT EXISTS(SELECT 1 FROM INFORMATION_SCHEMA.SCHEMATA

    WHERE SCHEMA_NAME = 'utils'

    AND SCHEMA_OWNER = 'dbo')

    BEGIN

    EXEC('CREATE SCHEMA utils AUTHORIZATION dbo')

    END

    GO

    IF NOT EXISTS(SELECT 1

    FROM INFORMATION_SCHEMA.ROUTINES

    WHERE ROUTINE_NAME = 'GenerateIndexesScript'

    AND ROUTINE_TYPE = N'PROCEDURE')

    BEGIN

    EXEC ('CREATE PROCEDURE [utils].[GenerateIndexesScript] AS BEGIN SELECT 1 END')

    END

    GO

    /*

    Adapted from http://www.sqlservercentral.com/Forums/Topic401784-562-2.aspx (by Jonathan AC Roberts. )

    Modifications 10/06/2010 By R.Doering - http://sqlsolace.blogspot.com

    1) Changed Schema of routine to Utils

    2) Changed Name from INFGenerateIndexesScript to GenerateIndexesScript

    3) Added Schemas to script

    4) Reformatted for clarity

    -- Usage: EXEC utils.GenerateIndexesScript 1, 0, 0

    */

    ALTER PROCEDURE utils.GenerateIndexesScript

    (

    @IncludeFileGroup bit = 1,

    @IncludeDrop bit = 1,

    @IncludeFillFactor bit = 1

    )

    AS

    BEGIN

    -- Get all existing indexes, but NOT the primary keys

    DECLARE Indexes_cursor CURSOR

    FOR SELECT

    SC.Name AS SchemaName

    , SO.Name AS TableName

    , SI.Object_Id AS TableId

    , SI.[Name] AS IndexName

    , SI.Index_ID AS IndexId

    , FG.[Name] AS FileGroupName

    , CASE WHEN SI.Fill_Factor = 0 THEN 100 ELSE SI.Fill_Factor END Fill_Factor

    FROM sys.indexes SI

    LEFT JOIN sys.filegroups FG

    ON SI.data_space_id = FG.data_space_id

    INNER JOIN sys.objects SO

    ON SI.object_id = SO.object_id

    INNER JOIN sys.schemas SC

    ON SC.schema_id = SO.schema_id

    WHERE ObjectProperty(SI.Object_Id, 'IsUserTable') = 1

    AND SI.[Name] IS NOT NULL

    AND SI.is_primary_key = 0

    AND SI.is_unique_constraint = 0

    AND IndexProperty(SI.Object_Id, SI.[Name], 'IsStatistics') = 0

    ORDER BY Object_name(SI.Object_Id), SI.Index_ID

    DECLARE @SchemaName sysname

    DECLARE @TableName sysname

    DECLARE @TableId int

    DECLARE @IndexName sysname

    DECLARE @FileGroupName sysname

    DECLARE @IndexId int

    DECLARE @FillFactor int

    DECLARE @NewLine nvarchar(4000) SET @NewLine = CHAR(13) + CHAR(10)

    DECLARE @tab nvarchar(4000) SET @tab = Space(4)

    -- Loop through all indexes

    OPEN Indexes_cursor

    FETCH NEXT

    FROM Indexes_cursor

    INTO @SchemaName, @TableName, @TableId, @IndexName, @IndexId, @FileGroupName, @FillFactor

    WHILE (@@Fetch_Status = 0)

    BEGIN

    DECLARE @sIndexDesc nvarchar(4000)

    DECLARE @sCreateSql nvarchar(4000)

    DECLARE @sDropSql nvarchar(4000)

    SET @sIndexDesc = '-- Index ' + @IndexName + ' on table ' + @TableName

    SET @sDropSql = 'IF EXISTS(SELECT 1' + @NewLine

    + ' FROM sysindexes si' + @NewLine

    + ' INNER JOIN sysobjects so' + @NewLine

    + ' ON so.id = si.id' + @NewLine

    + ' WHERE si.[Name] = N''' + @IndexName + ''' -- Index Name' + @NewLine

    + ' AND so.[Name] = N''' + @TableName + ''') -- Table Name' + @NewLine

    + 'BEGIN' + @NewLine

    + ' DROP INDEX [' + @IndexName + '] ON [' + @SchemaName + '].[' + @TableName + ']' + @NewLine

    + 'END' + @NewLine

    SET @sCreateSql = 'CREATE '

    -- Check if the index is unique

    IF (IndexProperty(@TableId, @IndexName, 'IsUnique') = 1)

    BEGIN

    SET @sCreateSql = @sCreateSql + 'UNIQUE '

    END

    --END IF

    -- Check if the index is clustered

    IF (IndexProperty(@TableId, @IndexName, 'IsClustered') = 1)

    BEGIN

    SET @sCreateSql = @sCreateSql + 'CLUSTERED '

    END

    --END IF

    SET @sCreateSql = @sCreateSql + 'INDEX [' + @IndexName + '] ON [' + @SchemaName + '].[' + @TableName + ']' + @NewLine + '(' + @NewLine

    -- Get all columns of the index

    DECLARE IndexColumns_cursor CURSOR

    FOR SELECT SC.[Name],

    IC.[is_included_column],

    IC.is_descending_key

    FROM sys.index_columns IC

    INNER JOIN sys.columns SC

    ON IC.Object_Id = SC.Object_Id

    AND IC.Column_ID = SC.Column_ID

    WHERE IC.Object_Id = @TableId

    AND Index_ID = @IndexId

    ORDER BY IC.[is_included_column],

    IC.key_ordinal

    DECLARE @IxColumn sysname

    DECLARE @IxIncl bit

    DECLARE @Desc bit

    DECLARE @IxIsIncl bit SET @IxIsIncl = 0

    DECLARE @IxFirstColumn bit SET @IxFirstColumn = 1

    -- Loop through all columns of the index and append them to the CREATE statement

    OPEN IndexColumns_cursor

    FETCH NEXT

    FROM IndexColumns_cursor

    INTO @IxColumn, @IxIncl, @Desc

    WHILE (@@Fetch_Status = 0)

    BEGIN

    IF (@IxFirstColumn = 1)

    BEGIN

    SET @IxFirstColumn = 0

    END

    ELSE

    BEGIN

    --check to see if it's an included column

    IF (@IxIsIncl = 0) AND (@IxIncl = 1)

    BEGIN

    SET @IxIsIncl = 1

    SET @sCreateSql = @sCreateSql + @NewLine + ')' + @NewLine + 'INCLUDE' + @NewLine + '(' + @NewLine

    END

    ELSE

    BEGIN

    SET @sCreateSql = @sCreateSql + ',' + @NewLine

    END

    --END IF

    END

    --END IF

    SET @sCreateSql = @sCreateSql + @tab + '[' + @IxColumn + ']'

    -- check if ASC or DESC

    IF @IxIsIncl = 0

    BEGIN

    IF @Desc = 1

    BEGIN

    SET @sCreateSql = @sCreateSql + ' DESC'

    END

    ELSE

    BEGIN

    SET @sCreateSql = @sCreateSql + ' ASC'

    END

    --END IF

    END

    --END IF

    FETCH NEXT

    FROM IndexColumns_cursor

    INTO @IxColumn, @IxIncl, @Desc

    END

    --END WHILE

    CLOSE IndexColumns_cursor

    DEALLOCATE IndexColumns_cursor

    SET @sCreateSql = @sCreateSql + @NewLine + ') '

    IF @IncludeFillFactor = 1

    BEGIN

    SET @sCreateSql = @sCreateSql + @NewLine + 'WITH (FillFactor = ' + Cast(@FillFactor as varchar(13)) + ')' + @NewLine

    END

    --END IF

    IF @IncludeFileGroup = 1

    BEGIN

    SET @sCreateSql = @sCreateSql + 'ON ['+ @FileGroupName + ']' + @NewLine

    END

    ELSE

    BEGIN

    SET @sCreateSql = @sCreateSql + @NewLine

    END

    --END IF

    PRINT '-- **********************************************************************'

    PRINT @sIndexDesc

    PRINT '-- **********************************************************************'

    IF @IncludeDrop = 1

    BEGIN

    PRINT @sDropSql

    PRINT 'GO'

    END

    --END IF

    PRINT @sCreateSql

    PRINT 'GO' + @NewLine + @NewLine

    FETCH NEXT

    FROM Indexes_cursor

    INTO @SchemaName, @TableName, @TableId, @IndexName, @IndexId, @FileGroupName, @FillFactor

    END

    --END WHILE

    CLOSE Indexes_cursor

    DEALLOCATE Indexes_cursor

    END

    GO