You have to change the nest after the time key change too so it should work like this:
SELECT e.FirstName + ' ' + e.LastName AS FullName, fsq.CalendarYear, fsq.CalendarQuarter, fsq.SalesAmountQuota, frs.SalesAmount,
CASE WHEN fsq.SalesAmountQuota > frs.SalesAmount THEN 1 ELSE CASE WHEN fsq.SalesAmountQuota = frs.SalesAmount THEN 0 ELSE - 1 END END AS Trend
FROM dbo.FactSalesQuota AS fsq INNER JOIN
DimEmployee AS e ON fsq.EmployeeKey = e.EmployeeKey LEFT OUTER JOIN
(SELECT f.EmployeeKey, t.CalendarYear, t.CalendarQuarter, SUM(f.SalesAmount) AS SalesAmount
FROM FactResellerSales AS f INNER JOIN
DimDate AS t ON f.DueDateKey = t.DateKey
GROUP BY f.EmployeeKey, t.CalendarYear, t.CalendarQuarter) AS frs ON fsq.EmployeeKey = frs.EmployeeKey