As Sean said, we need to know more about your data before we can give you a good answer. But are you maybe looking for something along these lines?
WITH
CTE AS
(
SELECT cq.ConditionalQuestionID
FROM ConditionalQuestions AS cq
INNER JOIN QuestionAnswers AS qa ON
cq.QuestionID = qa.QuestionID
WHERE
cq.QuestionID = 5 AND
qa.IsConditional = 'Y'
),
CTE2 AS
(
SELECT
[Type] = 'Q',
[Value] = q.Question,
[ID] = qa.QuestionID
FROM QuestionAnswers AS qa
INNER JOIN Questions AS q ON q.QuestionID = qa.QuestionID
INNER JOIN CTE AS c ON c.ConditionalQuestionID = qa.QuestionID
UNION ALL
SELECT
[Type] = 'A',
[Value] = a.Answer,
[ID] = qa.QuestionID
FROM QuestionAnswers AS qa
INNER JOIN Answers AS a ON a.AnswerID = qa.AnswerID
INNER JOIN CTE AS c ON c.ConditionalQuestionID = qa.QuestionID
)
SELECT
[Type],
[Value]
FROM CTE2
ORDER BY
[ID],
[Type] DESC
;